PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_010908080.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Arecales; Arecaceae; Arecoideae; Cocoseae; Elaeidinae; Elaeis
Family MIKC_MADS
Protein Properties Length: 238aa    MW: 27450.1 Da    PI: 9.383
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_010908080.1genomeOGView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF91.25.2e-29958150
                    S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
          SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                    krien++ rqvtf+kRrng+lK A+ELSvLCdaeva+i+fss+g+lyey+
  XP_010908080.1  9 KRIENTTSRQVTFCKRRNGLLKNAYELSVLCDAEVALIVFSSRGRLYEYA 58
                    79***********************************************8 PP

2K-box109.83e-36781744100
           K-box   4 ssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                     +sg   e + ++++qqe+akL+ +i+ Lq+ +Rhl+Ge L++L++keL+qLe++Le+++++iRskK+ell+++ie++qk+e elq++n++Lr+k+
  XP_010908080.1  78 NSGATIEINSQQYYQQESAKLRHQIQILQNANRHLMGEALSTLTVKELKQLENRLERGITRIRSKKHELLFAEIEYMQKREVELQNDNMYLRAKI 172
                     44555888999***********************************************************************************9 PP

           K-box  99 ee 100
                     +e
  XP_010908080.1 173 AE 174
                     86 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004323.1E-39160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006633.081161IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.7E-31275IPR002100Transcription factor, MADS-box
CDDcd002652.92E-44278No hitNo description
PRINTSPR004041.7E-31323IPR002100Transcription factor, MADS-box
PfamPF003192.8E-251057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-312338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-313859IPR002100Transcription factor, MADS-box
PfamPF014868.2E-2884172IPR002487Transcription factor, K-box
PROSITE profilePS5129715.90188178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0090376Biological Processseed trichome differentiation
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 238 aa     Download sequence    Send to blast
MGRGKIEIKR IENTTSRQVT FCKRRNGLLK NAYELSVLCD AEVALIVFSS RGRLYEYANN  60
SIRSTIDRYK KACANSSNSG ATIEINSQQY YQQESAKLRH QIQILQNANR HLMGEALSTL  120
TVKELKQLEN RLERGITRIR SKKHELLFAE IEYMQKREVE LQNDNMYLRA KIAENERAQQ  180
AGIVPAGPDF DALPTFDTRN YYHVNMLEAA QHYSHHQDQT TLHLGYEMKA DPAAKNLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P1e-19169169Myocyte-specific enhancer factor 2B
1tqe_Q1e-19169169Myocyte-specific enhancer factor 2B
1tqe_R1e-19169169Myocyte-specific enhancer factor 2B
1tqe_S1e-19169169Myocyte-specific enhancer factor 2B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010908080.11e-178PREDICTED: MADS-box transcription factor 21-like
SwissprotQ8RU311e-112MAD21_ORYSJ; MADS-box transcription factor 21
TrEMBLA0A076YHP61e-172A0A076YHP6_COCNU; AGAMOUS-like MADS-box protein
STRINGGSMUA_Achr7P23690_0011e-151(Musa acuminata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP64937144
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.11e-105MIKC_MADS family protein